Package: diseasemapping 2.0.6
diseasemapping: Modelling Spatial Variation in Disease Risk for Areal Data
Formatting of population and case data, calculation of Standardized Incidence Ratios, and fitting the BYM model using 'INLA'. For details see Brown (2015) <doi:10.18637/jss.v063.i12>.
Authors:
diseasemapping_2.0.6.tar.gz
diseasemapping_2.0.6.zip(r-4.5)diseasemapping_2.0.6.zip(r-4.4)diseasemapping_2.0.6.zip(r-4.3)
diseasemapping_2.0.6.tgz(r-4.4-any)diseasemapping_2.0.6.tgz(r-4.3-any)
diseasemapping_2.0.6.tar.gz(r-4.5-noble)diseasemapping_2.0.6.tar.gz(r-4.4-noble)
diseasemapping_2.0.6.tgz(r-4.4-emscripten)diseasemapping_2.0.6.tgz(r-4.3-emscripten)
diseasemapping.pdf |diseasemapping.html✨
diseasemapping/json (API)
| # Install 'diseasemapping' in R: |
| install.packages('diseasemapping', repos = c('https://eborgnine.r-universe.dev', 'https://cloud.r-project.org')) |
- casedata - Data set contains the number of cases information
- kentucky - Larynx cancer cases and population in Kentucky
- kentuckyTract - Larynx cancer cases and population in Kentucky
- larynx - Larynx cancer cases and population in Kentucky
- larynxRates - Larynx cancer cases and population in Kentucky
- popdata - Ontario 2006 population by census subdivision
- referencepop - Standard Canadian population data set from year 1991.
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 7 months agofrom:816259188c. Checks:OK: 4 ERROR: 1 NOTE: 2. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Sep 08 2024 |
| R-4.5-win | NOTE | Sep 08 2024 |
| R-4.5-linux | OK | Sep 08 2024 |
| R-4.4-win | OK | Sep 08 2024 |
| R-4.4-mac | OK | Sep 08 2024 |
| R-4.3-win | NOTE | Sep 08 2024 |
| R-4.3-mac | ERROR | Sep 08 2024 |
Exports:bymcancerRatesformatCasesformatPopulationgetBreaksgetRatesgetSMRgetStdRateinla.modelsnbToInlaGraph
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Disease Mapping | diseasemapping-package diseasemapping |
| Fit the BYM model | bym bym,formula,ANY,ANY,missing-method bym,formula,ANY,missing,missing-method bym,formula,data.frame,matrix,character-method bym,formula,SpatVector,matrix,character-method bym,formula,SpatVector,missing,character-method bym,formula,SpatVector,NULL,character-method bym-methods |
| Download cancer incidence rates from the International Agency for Research on Cancer (IARC) | cancerRates |
| Data set contains the number of cases information | casedata |
| Format the disease case data set | formatCases |
| Format a population data set | formatPopulation formatPopulation,data.frame-method formatPopulation,list-method formatPopulation,SpatVector-method formatPopulation-methods |
| Age Breaks | getBreaks |
| Calculate the estimated coefficients of age and sex group from the glm model | getRates |
| Calculate the standardized mortality/morbidity ratios | getSMR getSMR,data.frame,ANY,data.frame,character,character-method getSMR,data.frame,ANY,data.frame,character,missing-method getSMR,data.frame,ANY,data.frame,missing,missing-method getSMR,data.frame,ANY,missing,character,missing-method getSMR,data.frame,ANY,missing,missing,missing-method getSMR,list,ANY,ANY,ANY,ANY-method getSMR,SpatVector,ANY,ANY,ANY,ANY-method getSMR-methods |
| Calculate the standardized rate | getStdRate |
| Valid models in INLA | inla.models |
| Larynx cancer cases and population in Kentucky | kentucky kentuckyTract larynx larynxRates |
| Write a graph file for INLA | nbToInlaGraph |
| Ontario 2006 population by census subdivision | popdata |
| Standard Canadian population data set from year 1991. | referencepop |
