Package: diseasemapping 2.0.9

diseasemapping: Modelling Spatial Variation in Disease Risk for Areal Data

Formatting of population and case data, calculation of Standardized Incidence Ratios, and fitting the BYM model using 'INLA'. For details see Brown (2015) <doi:10.18637/jss.v063.i12>.

Authors:Patrick Brown [aut, cre, cph], Lutong Zhou [aut]

diseasemapping_2.0.9.tar.gz
diseasemapping_2.0.9.zip(r-4.7-any)diseasemapping_2.0.9.zip(r-4.6-any)diseasemapping_2.0.9.zip(r-4.5-any)
diseasemapping_2.0.9.tgz(r-4.6-any)diseasemapping_2.0.9.tgz(r-4.5-any)
diseasemapping_2.0.9.tar.gz(r-4.7-any)diseasemapping_2.0.9.tar.gz(r-4.6-any)
diseasemapping_2.0.9.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
diseasemapping/json (API)

# Install 'diseasemapping' in R:

install.packages('diseasemapping', repos = c('https://eborgnine.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://r-forge.r-project.org/projects/diseasemapping

Datasets:

casedata - Data set contains the number of cases information
kentucky - Larynx cancer cases and population in Kentucky
kentuckyTract - Larynx cancer cases and population in Kentucky
larynx - Larynx cancer cases and population in Kentucky
larynxRates - Larynx cancer cases and population in Kentucky
popdata - Ontario 2006 population by census subdivision
referencepop - Standard Canadian population data set from year 1991.

On CRAN:

3.40 score 333 downloads 1 mentions 10 exports 2 dependencies

Last updated from:15f8b7304f. Checks:2 NOTE, 6 OK, 1 ERROR. Indexed: yes.

Target	Result	Time
linux-devel-x86_64	NOTE	321
source / vignettes	OK	276
linux-release-x86_64	OK	292
macos-release-arm64	OK	298
macos-oldrel-arm64	ERROR	173
windows-devel-x86_64	NOTE	312
windows-release-x86_64	OK	202
windows-oldrel-x86_64	OK	314
wasm-release	OK	564

Exports:bym cancerRates formatCases formatPopulation getBreaks getRates getSMR getStdRate inla.models nbToInlaGraph

Dependencies:Rcpp terra

BYM models

Rendered frombymPc.Rnwusingknitr::knitr

Last update: 2024-02-07
Started: 2023-12-01

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Disease Mapping	diseasemapping-package diseasemapping
Fit the BYM model	bym bym,formula,ANY,ANY,missing-method bym,formula,ANY,missing,missing-method bym,formula,data.frame,matrix,character-method bym,formula,SpatVector,matrix,character-method bym,formula,SpatVector,missing,character-method bym,formula,SpatVector,NULL,character-method bym-methods
Download cancer incidence rates from the International Agency for Research on Cancer (IARC)	cancerRates
Data set contains the number of cases information	casedata
Format the disease case data set	formatCases
Format a population data set	formatPopulation formatPopulation,data.frame-method formatPopulation,list-method formatPopulation,SpatVector-method formatPopulation-methods
Age Breaks	getBreaks
Calculate the estimated coefficients of age and sex group from the glm model	getRates
Calculate the standardized mortality/morbidity ratios	getSMR getSMR,data.frame,ANY,data.frame,character,character-method getSMR,data.frame,ANY,data.frame,character,missing-method getSMR,data.frame,ANY,data.frame,missing,missing-method getSMR,data.frame,ANY,missing,character,missing-method getSMR,data.frame,ANY,missing,missing,missing-method getSMR,list,ANY,ANY,ANY,ANY-method getSMR,SpatVector,ANY,ANY,ANY,ANY-method getSMR-methods
Calculate the standardized rate	getStdRate
Valid models in INLA	inla.models
Larynx cancer cases and population in Kentucky	kentucky kentuckyTract larynx larynxRates
Write a graph file for INLA	nbToInlaGraph
Ontario 2006 population by census subdivision	popdata
Standard Canadian population data set from year 1991.	referencepop