{ "_id": "6a60d9aa1fed6d528131b1e6", "Package": "diseasemapping", "Type": "Package", "Title": "Modelling Spatial Variation in Disease Risk for Areal Data", "Version": "2.0.9", "Date": "2025-07-11", "Authors@R": "c(person(\"Patrick\", \"Brown\", \nrole = c(\"aut\", \"cre\",\"cph\"),\nemail = \"patrick.brown@utoronto.ca\"\n),\nperson(\"Lutong\", \"Zhou\", role = \"aut\")\n)", "Additional_repositories": "https://inla.r-inla-download.org/R/testing", "Description": "Formatting of population and case data, calculation of\nStandardized Incidence Ratios, and fitting the BYM model using\n'INLA'. For details see Brown (2015)\n.", "License": "GPL", "VignetteBuilder": "knitr", "Config/pak/sysreqs": "libgdal-dev gdal-bin libgeos-dev libproj-dev\nlibsqlite3-dev", "Repository": "https://eborgnine.r-universe.dev", "Date/Publication": "2026-07-22 13:29:41 UTC", "RemoteUrl": "https://github.com/r-forge/diseasemapping", "RemoteRef": "HEAD", "RemoteSha": "15f8b7304fe47e67f4c106e8cb6d045f099eca00", "RemoteSubdir": "pkg/diseasemapping", "NeedsCompilation": "no", "Packaged": { "Date": "2026-07-22 14:44:22 UTC", "User": "root" }, "Author": "Patrick Brown [aut, cre, cph],\nLutong Zhou [aut]", "Maintainer": "Patrick Brown ", "_user": "eborgnine", "_type": "src", "_file": "diseasemapping_2.0.9.tar.gz", "_fileid": "https://r2.ropensci.org/9285dfbeadd9641ac87904425ea3d53c8d835faf4bc30f8fd1a85c17f24a53e7", "_filesize": 1267502, "_sha256": "9285dfbeadd9641ac87904425ea3d53c8d835faf4bc30f8fd1a85c17f24a53e7", "_expires": "2026-10-30T14:54:31.000Z", "_created": "2026-07-22T14:44:22.000Z", "_published": "2026-07-22T14:54:34.031Z", "_jobs": [ { "job": 88957139933, "time": 321, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "8533806284" }, { "job": 88957139840, "time": 292, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "8533789447" }, { "job": 88957139823, "time": 173, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "ERROR", "artifact": "8533721697" }, { "job": 88957139834, "time": 298, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "8533792607" }, { "job": 88955855322, "time": 276, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "8533621633" }, { "job": 88957139817, "time": 564, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "8533942809" }, { "job": 88957140004, "time": 312, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "8533800929" }, { "job": 88957140072, "time": 314, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "8533802076" }, { "job": 88957140047, "time": 202, "config": "windows-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "8533739487" } ], "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/eborgnine/actions/runs/29929673755", "_status": "success", "_upstream": "https://github.com/r-forge/diseasemapping", "_commit": { "id": "15f8b7304fe47e67f4c106e8cb6d045f099eca00", "author": "patrick (Patrick Brown) ", "committer": "patrick (Patrick Brown) ", "message": "version\n\ngit-svn-id: svn://svn.r-forge.r-project.org/svnroot/diseasemapping@3590 edb9625f-4e0d-4859-8d74-9fd3b1da38cb\n", "time": 1784726981 }, "_maintainer": { "name": "Patrick Brown", "email": "patrick.brown@utoronto.ca", "login": "eborgnine", "description": "Patrick Brown", "uuid": 5818919 }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.5.0", "role": "Depends" }, { "package": "stats", "role": "Imports" }, { "package": "utils", "role": "Imports" }, { "package": "terra", "role": "Imports" }, { "package": "methods", "role": "Imports" }, { "package": "knitr", "role": "Suggests" }, { "package": "mapmisc", "version": ">= 1.9.0", "role": "Enhances" }, { "package": "INLA", "role": "Enhances" }, { "package": "mgcv", "role": "Enhances" }, { "package": "XML", "role": "Enhances" } ], "_owner": "r-forge", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2026-03", "n": 5 }, { "week": "2026-09", "n": 18 }, { "week": "2026-10", "n": 8 }, { "week": "2026-29", "n": 2 }, { "week": "2026-30", "n": 3 } ], "_tags": [], "_stars": 0, "_contributors": [ { "user": "eborgnine", "count": 2681, "uuid": 5818919 }, { "user": "rryong", "count": 616, "uuid": 55711252 }, { "user": "lennon-li", "count": 61, "uuid": 85519713 }, { "user": "bowei-xiao", "count": 8, "uuid": 12563597 }, { "user": "lmsstudios", "count": 1, "uuid": 97995137 }, { "user": "theussl", "count": 1, "uuid": 22165873 } ], "_userbio": { "uuid": 5818919, "type": "user", "name": "eborgnine", "followers": 7, "description": "Patrick Brown" }, "_downloads": { "count": 333, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/diseasemapping" }, "_mentions": 1, "_devurl": "https://github.com/r-forge/diseasemapping", "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/diseasemapping.html", "manual.pdf" ], "_realowner": "eborgnine", "_cranurl": false, "_releases": [ { "version": "0.2", "date": "2009-04-17" }, { "version": "0.3", "date": "2009-04-26" }, { "version": "0.4", "date": "2009-06-07" }, { "version": "0.5.3", "date": "2009-10-05" }, { "version": "0.6", "date": "2012-01-17" }, { "version": "0.7.3", "date": "2013-06-09" }, { "version": "0.7.5", "date": "2013-07-17" }, { "version": "0.7.7", "date": "2014-08-14" }, { "version": "1.0.1", "date": "2014-09-24" }, { "version": "1.1.0", "date": "2014-10-06" }, { "version": "1.1.2", "date": "2014-11-13" }, { "version": "1.1.4", "date": "2015-01-05" }, { "version": "1.1.5", "date": "2015-01-15" }, { "version": "1.1.7", "date": "2015-02-25" }, { "version": "1.2.0", "date": "2015-03-25" }, { "version": "1.2.3", "date": "2015-07-07" }, { "version": "1.2.7", "date": "2015-11-09" }, { "version": "1.4.0", "date": "2016-03-07" }, { "version": "1.4.2", "date": "2016-09-20" }, { "version": "1.4.6", "date": "2018-07-12" }, { "version": "1.4.9", "date": "2020-05-05" }, { "version": "1.5.0", "date": "2021-03-12" }, { "version": "1.5.1", "date": "2021-09-10" }, { "version": "2.0.0", "date": "2023-09-15" }, { "version": "2.0.1", "date": "2023-09-17" }, { "version": "2.0.2", "date": "2023-09-19" }, { "version": "2.0.3", "date": "2023-09-21" }, { "version": "2.0.5", "date": "2023-12-04" }, { "version": "2.0.6", "date": "2024-02-09" } ], "_exports": [ "bym", "cancerRates", "formatCases", "formatPopulation", "getBreaks", "getRates", "getSMR", "getStdRate", "inla.models", "nbToInlaGraph" ], "_datasets": [ { "name": "casedata", "title": "Data set contains the number of cases information", "object": "casedata", "file": "casedata.RData", "class": [ "data.frame" ], "fields": [ "Year", "CSD2006", "CD2006", "PR2006", "AGE_SEX_GROUP", "sex", "age", "cases" ], "rows": 6508, "table": true, "tojson": true }, { "name": "kentucky", "title": "Larynx cancer cases and population in Kentucky", "object": "kentucky", "file": "kentucky.RData", "class": [ "PackedSpatVector" ], "fields": [], "table": false, "tojson": false }, { "name": "kentuckyTract", "title": "Larynx cancer cases and population in Kentucky", "object": "kentuckyTract", "file": "kentuckyTract.RData", "class": [ "PackedSpatVector" ], "fields": [], "table": false, "tojson": false }, { "name": "larynx", "title": "Larynx cancer cases and population in Kentucky", "object": "kentucky", "file": "kentucky.RData", "class": [ "data.frame" ], "fields": [ "County", "Cases", "sex", "age" ], "rows": 240, "table": true, "tojson": true }, { "name": "larynxRates", "title": "Larynx cancer cases and population in Kentucky", "object": "kentucky", "file": "kentucky.RData", "class": [ "numeric" ], "fields": [], "table": false, "tojson": true }, { "name": "popdata", "title": "Ontario 2006 population by census subdivision", "object": "popdata", "file": "popdata.RData", "class": [ "PackedSpatVector" ], "fields": [], "table": false, "tojson": false }, { "name": "referencepop", "title": "Standard Canadian population data set from year 1991.", "object": "referencepop", "file": "referencepop.RData", "class": [ "data.frame" ], "fields": [ "POPULATION", "sex", "age" ], "rows": 36, "table": true, "tojson": true } ], "_help": [ { "page": "diseasemapping-package", "title": "Disease Mapping", "topics": [ "diseasemapping-package", "diseasemapping" ] }, { "page": "bym", "title": "Fit the BYM model", "topics": [ "bym", "bym,formula,ANY,ANY,missing-method", "bym,formula,ANY,missing,missing-method", "bym,formula,data.frame,matrix,character-method", "bym,formula,SpatVector,matrix,character-method", "bym,formula,SpatVector,missing,character-method", "bym,formula,SpatVector,NULL,character-method", "bym-methods" ] }, { "page": "cancerRates", "title": "Download cancer incidence rates from the International Agency for Research on Cancer (IARC)", "topics": [ "cancerRates" ] }, { "page": "casedata", "title": "Data set contains the number of cases information", "topics": [ "casedata" ] }, { "page": "formatCases", "title": "Format the disease case data set", "topics": [ "formatCases" ] }, { "page": "formatPopulation", "title": "Format a population data set", "topics": [ "formatPopulation", "formatPopulation,data.frame-method", "formatPopulation,list-method", "formatPopulation,SpatVector-method", "formatPopulation-methods" ] }, { "page": "getBreaks", "title": "Age Breaks", "topics": [ "getBreaks" ] }, { "page": "getRates", "title": "Calculate the estimated coefficients of age and sex group from the glm model", "topics": [ "getRates" ] }, { "page": "getSMR", "title": "Calculate the standardized mortality/morbidity ratios", "topics": [ "getSMR", "getSMR,data.frame,ANY,data.frame,character,character-method", "getSMR,data.frame,ANY,data.frame,character,missing-method", "getSMR,data.frame,ANY,data.frame,missing,missing-method", "getSMR,data.frame,ANY,missing,character,missing-method", "getSMR,data.frame,ANY,missing,missing,missing-method", "getSMR,list,ANY,ANY,ANY,ANY-method", "getSMR,SpatVector,ANY,ANY,ANY,ANY-method", "getSMR-methods" ] }, { "page": "getStdRate", "title": "Calculate the standardized rate", "topics": [ "getStdRate" ] }, { "page": "inla.models", "title": "Valid models in INLA", "topics": [ "inla.models" ] }, { "page": "kentucky", "title": "Larynx cancer cases and population in Kentucky", "topics": [ "kentucky", "kentuckyTract", "larynx", "larynxRates" ] }, { "page": "nbInlaToGraph", "title": "Write a graph file for INLA", "topics": [ "nbToInlaGraph" ] }, { "page": "popdata", "title": "Ontario 2006 population by census subdivision", "topics": [ "popdata" ] }, { "page": "referencepop", "title": "Standard Canadian population data set from year 1991.", "topics": [ "referencepop" ] } ], "_rundeps": [ "Rcpp", "terra" ], "_vignettes": [ { "source": "bymPc.Rnw", "filename": "bymPc.pdf", "title": "BYM models", "engine": "knitr::knitr", "headings": [], "created": "2023-12-01 20:10:46", "modified": "2024-02-07 15:47:11", "commits": 3 } ], "_score": 3.3979400086720375, "_indexed": true, "_nocasepkg": "diseasemapping", "_universes": [ "eborgnine", "r-forge" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "2.0.9", "date": "2026-07-22T14:47:13.000Z", "distro": "resolute", "commit": "15f8b7304fe47e67f4c106e8cb6d045f099eca00", "fileid": "https://r2.ropensci.org/632038c1385ee100a1e737b10551228897af4eed93d7b443eb66fe717f8aee66", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/eborgnine/actions/runs/29929673755" }, { "r": "4.6.1", "os": "linux", "version": "2.0.9", "date": "2026-07-22T14:47:14.000Z", "distro": "resolute", "commit": "15f8b7304fe47e67f4c106e8cb6d045f099eca00", "fileid": "https://r2.ropensci.org/54ae8c4e5dc906b44f652accb2f95805584317201857522450e070d656b2b885", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/eborgnine/actions/runs/29929673755" }, { "r": "4.5.3", "os": "mac", "version": "2.0.9", "date": "2026-07-22T14:46:37.000Z", "commit": "15f8b7304fe47e67f4c106e8cb6d045f099eca00", "fileid": "https://r2.ropensci.org/53659d4622a81c46074313c05801a0dd9e5e646dcd054cb031d0991a0f9e25a4", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/eborgnine/actions/runs/29929673755" }, { "r": "4.6.1", "os": "mac", "version": "2.0.9", "date": "2026-07-22T14:46:33.000Z", "commit": "15f8b7304fe47e67f4c106e8cb6d045f099eca00", "fileid": "https://r2.ropensci.org/50d5f0f10804abdfc3d65d096be4ad60a24810a332e4f51dadcc95a6f8409147", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/eborgnine/actions/runs/29929673755" }, { "r": "4.6.0", "os": "wasm", "version": "2.0.9", "date": "2026-07-22T14:54:08.000Z", "commit": "15f8b7304fe47e67f4c106e8cb6d045f099eca00", "fileid": "https://r2.ropensci.org/1aa785729253e2d891017e3d457bb02aac3e5f2f52d0baf4ca6de18676d7d186", "status": "success", "buildurl": "https://github.com/r-universe/eborgnine/actions/runs/29929673755" }, { "r": "4.7.0", "os": "win", "version": "2.0.9", "date": "2026-07-22T14:46:07.000Z", "commit": "15f8b7304fe47e67f4c106e8cb6d045f099eca00", "fileid": "https://r2.ropensci.org/cd0b0c120d674efc80ff3165da99ee794a6b09bf6f1008663d8587f2c918a246", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/eborgnine/actions/runs/29929673755" }, { "r": "4.5.3", "os": "win", "version": "2.0.9", "date": "2026-07-22T14:46:09.000Z", "commit": "15f8b7304fe47e67f4c106e8cb6d045f099eca00", "fileid": "https://r2.ropensci.org/67df717cebbb9031d6480c81490aea2acf938c906269063e8c4dad1a5cdc06d1", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/eborgnine/actions/runs/29929673755" }, { "r": "4.6.1", "os": "win", "version": "2.0.9", "date": "2026-07-22T14:46:48.000Z", "commit": "15f8b7304fe47e67f4c106e8cb6d045f099eca00", "fileid": "https://r2.ropensci.org/3cf8617274d574d5d625aa9b94dca8dc1f3dd061ed3eb5cde11299d89478be1d", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/eborgnine/actions/runs/29929673755" } ] }